MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6031_ses-1_T1w.
  • Date and time: 2023-08-10, 17:04.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.38407364714207615
cnr3.5357298031174182
efc0.5134574208214
fber3426.3438161526865
fwhmavg3.5778699999999994
fwhmx3.51269
fwhmy3.89446
fwhmz3.32646
icvscsf0.23729341727331113
icvsgm0.3694664199592294
icvswm0.39324016276745943
inumed1.4292147159576416
inurange0.332673043012619
qi14.652745140976043e-05
qi20.024634899826111972
rpvecsf25.481908224506437
rpvegm15.730904916989925
rpvewm19.435059092642014
sizex176
sizey256
sizez256
snrcsf3.776025835952132
snrgm9.779251908270231
snrtotal11.242390544099708
snrwm20.17189388807676
snrdcsf50.27371212475789
snrdgm84.44325212729939
snrdtotal85.50613476115615
snrdwm121.80144003141116
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk14.408502838877567
summarybgmad5.378724619629937
summarybgmean9.891853044144971
summarybgmedian7.255789250135422
summarybgn2137317.0
summarybgp053.5831058025360107
summarybgp9521.677790105342865
summarybgstdv6.470524363323289
summarycsfk0.010732593945907087
summarycsfmad102.6273938226922
summarycsfmean395.56782397362673
summarycsfmedian412.7513940408826
summarycsfn8632.0
summarycsfp05188.98867611363528
summarycsfp95545.6084783166646
summarycsfstdv109.30208188871254
summarygmk-0.12338700490898091
summarygmmad72.24756032293051
summarygmmean693.0617150171131
summarygmmedian693.2861839681864
summarygmn17153.0
summarygmp05575.858849054575
summarygmp95808.5009510487318
summarygmstdv70.89151412463812
summarywmk0.7831759311084516
summarywmmad45.55314924773008
summarywmmean1000.5864890816749
summarywmmedian1000.0000406652689
summarywmn210940.0
summarywmp05920.5894583165646
summarywmp951082.8145735263824
summarywmstdv49.573811753549144
tpmoverlapcsf0.1413869857788086
tpmoverlapgm0.39967620372772217
tpmoverlapwm0.4810963273048401
wm2max0.44497369260204084
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime13:32:9.257500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[0.0132712, 0.999912, -7.87629e-10, -0.00495793, 6.58027e-05, -0.999988]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.262
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2645, 5345, -7447, -25, 29, -668, 89, -256]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp220.724
md5sumeb1f004607cd50cb8d703c1ce0bb49a5
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.